Trainee Publications

2011


Carlson MW
, Garlick JA, Solomon LW. 2011. Chronic ulcerative stomatitis: evidence of autoimmune pathogenesis. Oral Surg Oral Med Oral Pathol Oral Radiol Endod. Epub ahead of print. books

Kowalski JR, Dahlberg CL, Juo P. 2011. The deubiquitinating enzyme USP-46 negatively regulates the degradation of glutamate receptors to control their abundance in the ventral nerve cord of Caenorhabditis elegans. J Neurosci. 31: 1341-1354. books

Lin Y, Gallucci GO, Busser GD, Bosshardt D, Belser UC, Yelick PC. 2011. Bioengineered Periodontal Tissue Formed on Titanium Dental Implants.J Dent Res. 90: 251-256. Abstract in PubMed

Liu JM, Camilli A. 2011. Discovery of bacterial sRNAs by high-throughput sequencing. Methods Mol Bio. 733: 63-79. books

Shamis Y, Hewitt KJ, Carlson MW, Margvelashvilli M, Dong S, Kuo CK, Daheron L, Egles C, Garlick JA. Fibroblasts derived from human embryonic stem cells direct development and repair of 3D human skin equivalents. Stem Cell Res Ther. 21: 10. books

2010


Bolling BW, McKay DL, Blumberg JB. 2010. The phytochemical composition and antioxidant actions of tree nuts. Asia Pac J Clin Nutr. 19: 117-123. Abstract in PubMed

Bolling B, Blumberg J, Oliver Chen C-Y. 2010. The influence of roasting, pasteurization, and storage on the polyphenol content and antioxidant capacity of California almond skins. Food Chem., in press.

Carlson M, Faria K, Shamis Y, Leman J, Ronfard V, Garlick J. 2010. Epidermal stem cells are preserved during commercial-scale manufacture of a bilayered, living cellular construct (Apligraf(®). Tissue Eng Part A, Epub ahead of print.  Abstract in PubMed

Carlson MW, Garlick JA, Egles C.  2010. Tissue-engineered models for the study of cutaneous wound-healing.  In: Bioengingeering Research of Chronic Wounds, pp 263-280, Springer, NY, NY.

Durand EA, Maldonado-Arocho FJ, Castillo C, Walsh RL, Mecsas J. 2010. The presence of professional phagocytes dictates the number of host cells targeted for Yop translocation during infection. Cell Microbiol. 12: 1064-1082.  Abstract in PubMed

Giel JL, Sorg JA, Sonenshein AL, Zhu J. 2010. Metabolism of bile salts in mice influences spore germination in Clostridium difficile. PLoS One 5: e8740.  Abstract in PubMed

Lafratta CN, Huh SP, Mallillin AC, Riviello PJ, Walt DR. 2010. Visualizing fluorescence: Using a homemade fluorescence "microscope" to view latent fingerprints on paper. J Chem Educ. 87:1105-1107. Abstract in PubMed

Lewis CL, Choi C, Lin Y, Lee C, Yi H. 2010. Fabrication of uniform DNA-conjugated hydrogel microparticles via replica molding for facile nucleic acid hybridization assays. Anal Chem. 82: 5851-5858. Abstract in PubMed

Lewis CL, Lin Y, Yang C, Manocchi AK, Yuet KP, Doyle PS, Yi H. 2010. Microfluidic fabrication of hydrogel microparticles containing functionalized viral nanotemplates. Langmuir. 26: 13436-13441. Abstract in PubMed

Liu JM, Camilli A. 2010. A broadening world of bacterial small RNAs. Curr Opin Microbiol. 13: 18-23. books 

McCready J, Sims JD, Chan D, Jay DG. 2010. Secretion of extracellular hsp90α via exosomes increases cancer cell motility: a role for plasminogen activation. BMC Cancer 10: 294. Abstract in PubMed

McCready J, Arendt LM, Rudnick JA, Kuperwasser C. 2010. The contribution of dynamic stromal remodeling during mammary development to breast carcinogenesis. Breast Cancer Res 12: 205.  Abstract in PubMed

Sorg JA, Sonenshein AL. 2010. Inhibiting the initiation of Clostridium difficile spore germination using analogs of chenodeoxycholic acid, a bile acid. J Bacteriol. 192: 4983-4990. Abstract in PubMed

2009 


Bolling B, Blumberg J, Chen C-Y. 2009. Extraction methods determine the antioxidant capacity and induction of quinone reductase by soy products in vitro. Food Chemistry. 116: 351-355.

Bolling B, Chen C-Y, Blumberg J. 2009. Tea and health: Preventive and therapeutic usefulness in the elderly? Curr Opin Clin Nutr Metab Care. 12: 42-48. Abstract in PubMed

Bolling B, Court MH, Blumberg J, Oliver Chen C-Y . 2009. The kinetic basis for age-associated changes in quercetin and genistein glucuronidation by rat liver microsomes. J Nutr Biochem. 21: 498-503. Abstract in PubMed

Bolling B, Dolnikowski G, Blumberg J, Oliver Chen C-Y. 2009. Quantification of almond skin polyphenols by liquid chromatography-mass spectrometry. J Food Sci. 74: C326-C332. Abstract in PubMed

Cipriano DJ, Wang Y, Bond S, Hinton A, Jefferies KC, Qi J, Forgac M. 2008. Structure and regulation of the vacuolar ATPases. Biochim Biophys Acta. 1777: 599-604. Abstract in PubMed

Diess F, LaFratta CN, Symer MM, Blicharz T, Sojic N, Walt DR. 2009. Multiplexed sandwich immunoassays using electrochemiluminescence imaging resolved at the single bead level. J Am Chem Soc. 131: 6088-6089. Abstract in PubMed

Donaldson C, Eder S, Baker C, Aronovitz M, Weiss A, Hall-Porter M, Wang F, Ackerman A, Karas R, Molkentin J, Patten R. 2009. Estrogen attenuates left ventricular and cardiomyocyte hypertrophy by an estrogen receptor-dependent pathway that increases calcineurin degradation. Circ Res. 104:265-275. Abstract in PubMed

Hewitt K, Shamis Y, Carlson MW, Aberdam E, Aberdam D, Garlick JA.  2009.   Three-dimensional epithelial tissues generated from human embryonic stem cells.  Tissue Eng Part A. 15: 3417-26. Abstract in PubMed

Hinton A, Sennoune SR, Bond S, Fang M, Reuveni M, Sahagian GG, Jay D, Martinez-Zaguilan R, Forgac M. 2009. Function of a subunit isoforms of the V-ATPase in pH homeostasis and in vitro invasion of MDA-MB231 human breast cancer cells. J Biol Chem. 284: 16400-164008. Abstract in PubMed

Hinton A, Bond S, Forgac M.  2009. V-ATPase functions in normal and disease processes. Pflugers Arch. 457: 589-598. Abstract in PubMed

Hwang S, LaFratta CN, Agarwal V, Yu J, Walt DR, Sonkusale S. 2009. CMOS microelectrode array for electrochemical Lab-on-a-Chip applications. Conf Proc IEEE Sensors.

Li Z, Dugan AS, Bloomfield G, Skelton J, Ivens A, Losick V, Isberg RR. 2009. The amoebal MAP kinase response to Legionella pneumophila is regulated by DupA. Cell Host Microbe 17: 253-267.  books

Liu JM, Livny J, Lawrence MS, Kimball MD, Waldor MK, Camilli A. 2009. Experimental discovery of sRNAs in Vibrio cholerae by direct cloning, 5S/tRNA depletion and parallel sequencing. Nucleic Acids Res. 37: e46. books

Liu JM, Camilli A. 2009. Discovery of sRNAs by high-throughput sequencing, Methods in Molecular Biology, in press.

Murphy AR, Kaplan DL. 2009. Biomedical applications of chemically-modified silk fibroin. J Mater Chem. 19: 6443.

Patten R, Hall-Porter M. 2009. Small animal models of heart failure: Development of novel therapies, past and present. Circ Heart Fai. 2: 138-144. Abstract in PubMed

Sorg JA, Dineen SS. 2009. Laboratory maintenance of Clostridium difficile. Curr Protoc Microbiol. Chapter 9: Unit9A.1. Abstract in PubMed

Sorg JA, Sonenshein AL. 2009.  Chenodeoxycholate is an inhibitor of germination of Clostridium difficile spores. J. Bacteriol 191: 1115-1117. Abstract in PubMed

Thomas SW, Chiechi RC, LaFratta CN, Webb MR, Lee A, Wiley BJ, Zakin MR, Walt DR, Whitesides GM. 2009. Infochemistry and infofuses for the chemical storage and transmission of coded information. Proc Natl Acad Sci USA 106: 9147-9150. Abstract in PubMed

Walt DR, LaFratta CN, Webb M, Li Z, Gorris HH, Ryan H. 2009. Optical fiber microarrays for chemical and biological measurements. Mater Res Soc Symp Pro. 1133: AA02-AA01.

Webb M, LaFratta C, Walt D. 2009. Chromatically resolved optical microscope (CROMoscope): a grating-based instrument for spectral imaging. Anal Chem. 81: 7309-7313. Abstract in PubMed

Wenk E, Murphy A, Kaplan D, Meinel L, Merkle H, Uebersax L. 2009 The use of sulfonated silk fibroin derivatives to control binding, delivery and potency of FGF-2 in tissue regeneration.  Biomaterials. epub ahead of print. 

2008


Carlson MW, Alt-Holland A, Egles C, Garlick JA.  2008. Three-dimensional tissue models of normal and diseased skin. Curr Protoc Cell Biol. Chapter 19: Unit 19.9. Abstract in PubMed

LaFratta C, Walt D. 2008. Very high density sensing arrays.  Chem Rev. 108: 614-637. Abstract in PubMed

Lin Y, Yelick PC. 2008. Dental and craniofacial tissue engineering. In: Translational Approaches in Tissue Engineering and Regenerative Medicine, Artech House, Chap 10, pp 181-194.

Lin Y, Yelick PC. 2008. Dental Tissue Engineering. In Principles of Regenerative Medicine, Chap 75, pp 1286-1297.

Murphy A, St John P, Kaplan D. 2008. Modification of silk fibroin using diazonium coupling chemistry and the effects on hMSC proliferation and differentiation. Biomaterials. 29:2829-2838. Abstract in PubMed

Sorg JA, Sonenshein AL. 2008.  Bile salts and glycine as co-germinants for Clostridium difficile spores.  J Bacteriol. 190: 2505-2512.  Abstract in PubMed

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